Wednesday, February 19, 2020

Deterministic Lateral Displacement - what it is?

Deterministic Lateral Displacement (DLD) is a passive particle separation technique. It was first introduced in 2004 by Huang et al. and his colleagues for separation of microspheres and for DNA separation.

For a simple explanation, the separation of particles occurs inside a pillar array. The sample, consisting of a heterogeneous population, is loaded into an array of obstacles. Those particles pass through the pillar array in different paths depending on their sizes. Small particles move straight, following the flow while the big particles are displaced in relationship to the flow direction, and huge particles are trapped in the entrance of the array. The trajectory of each particle is a 5 function of its effective size. The effective size, in turn, is determined by a combination of size, shape and orientation of the particle in a certain position.
Before introducing DLD theory and the factors that influence particle behaviors, a brief review of fluid flow in microfluidics is necessary. In microfluidics, continuum fluid dynamics is described by the NavierStokes equation:
where ▽p is the gradient of the pressure, ƞ is the dynamic viscosity, u is the velocity of the fluid. This equation is simplified from Newton’s second law when the inertial term is negligible, which is the case for very low Reynolds numbers (Re≤10-3 ). The Reynolds number is the ratio between inertial and viscous effects. For a fluid with density ρ, viscosity η, average velocity u and characteristic dimension D, the Reynolds number is calculated using the following equation
Due to the small channels in microfluidics (with a diameter ranging from 100nm to 100µm), the Reynolds number is small and usually less than 500 where the flow is completely laminar and no turbulence occurs, but the mass transfer Péclet number (competition between convection and diffusion) is often large.

 In laminar flow (or streamline flow), the motion of particles is confined to streamlines. Thus, in a straight channel, particles move parallel to each other although their velocities can vary according to their positions. Furthermore, if a particle can be switched to another streamline when moving, it can be sorted out in the end from the initial mixture. Relying on the property of laminar flow, various methods apply an external force to push the targeted particles away from one streamline to another and consequently achieve separation (active sorting techniques). As a passive sorting technique, DLD array also changes the streamlines of targeted particles, but it does this through interactions between the particles and the pillar array, and not through externally applied fields. The separation performance of each DLD device is based on its critical size (DC). Davis et al. gave 6 an empirical formula describing the critical size based on experiments with a parabolic flow profile and rigid spherical particle
where DC is the critical diameter, G is the gap between two posts, and N is the period of the array. This equation can be expressed in some practical parameters as shown in Figure 2-4. Note that N=λ/Δλ.

The critical size is an important parameter for the sorting characteristics of a DLD device. All particles smaller than a critical size move in zig-zag mode with the flow while bigger ones are displaced in relation to the flow direction. Gap size and the depth of a device are other device parameters that need to be considered carefully for particle sorting due to trapping or clogging. Particles bigger than device depth or gap size may be trapped in the reservoirs or in the entrance of array.

In general, when discussing the performance of sorting devices, the important parameters are purity, capture rate, resolution, and throughput. For biological samples or cells, cell viability, and cell recovery can be added to this list. Overall, the sorting efficiency is evaluated based on which combination of these parameters is most important in each separate case (high purity, high throughput or cell recovery, etc.).

More information in my LIC-PhD thesis in Lund university

Tuesday, February 18, 2020

Microfluidics - simple definition

Microfluidics is a multi-disciplinary field of engineering, physics, chemistry, biochemistry, nanotechnology, and biotechnology. By controlling and manipulating liquids at low volume (micro-nano scale), microfluidics has achieved a lot of practical applications such as multiplexing, automation, and high-throughput screening.  Lab-on-a-chip (LOC) technology is a concept of integrating several preparative or analytical processes onto a single chip that fits in a human hand. The improvement of LOC technology is intrinsically linked to microfluidics and microtechnology of semiconductors. 

Microfluidics has been evolved extremely fast since the contribution of microelectronics in the mid-1950s. Using the photolithography technique in micro-fabrication, the first LOC of gas chromatography was created in 1979 (4). However, the field was still unexplored yet until soft-lithography which adapted microfabrication process for the polymer chips was introduced in the late 80s (5). This solution opened the ability to easily fabricate polymer chips in any lab and offered a wide range of applications in materials, chemistry, and biology as the picture below.


Microfluidics is mainly applied to biotechnology which requires highly sophisticated tools with automated and efficient approaches. One of the greatest achievement is an amplification of DNA strands by massively parallel PCRs (polymerase chain reaction). Other different techniques were succeeded for sequencing DNA, genomics, protein analysis and biorecognition.  In the micro-scale, cell study has been developed quickly for the pharmaceutical industry.  Those include cellular culture, cellular communication, cell proliferation, migration and stem cell differentiation, specifically in cellular mechanics.  
In preparation for those studies, there are many factors that need to be considered and will depend strongly on the types of sample and properties. For instance, cells can be described by intracellular properties (DNA, RNA, and protein molecule interaction) or extracellular physical properties (size, morphology and surface protein expression). In fact, the need for isolation and sorting cells according to different properties of interest is a central component. Researchers have already used a mix of flow-cytometry, magnetic separation, and density-gradient separation but still require newer chip-based technologies to change the field.        
In the field of particle and cell sorting, microfluidics can offer accurate and high-throughput methods which are comparable to conventional methods. Those can be classified as either active or passive sorting. An alternative way to categorize the field is fluorescent label-base sorting, bead-based sorting and label-free sorting.   
While fluorescence label-based sorting relies on molecular interactions to selectively identify the types of cell, label-free separation based on an inherent physical characteristic of the cell. Such physical markers could be cell size, shape, deformability, density, electrical polarizability, electrical impedance, magnetic susceptibility and hydrodynamic properties.  

C:\Users\ftf-hnt\Private_Files\1. projects and report\10. LIC thesis\Figure 2_Sorting techniques.png

The work in this thesis is based on Deterministic Lateral Displacement, a passive and label-free sorting. More specifically, two main topics, which focus on the cell sorting, are easy-to-use open DLD for general sorting applications and deformability-based DLD for cancer cells. 
More information from my PhD LIC thesis in Lund University:

Deterministic Lateral Displacement - what it is?

Deterministic Lateral Displacement (DLD) is a passive particle separation technique. It was first introduced in 2004 by Huang et al. and hi...